rs230995770 SNP Detail

Summary

• ID
  rs230995770
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141390218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTATGCA CAAAGAACCC
  TAAAGGAGGC AGGCGGTGTG GTACTCATCT TTAAGGCCAG CACTCTGGAG GGAGAGTTTG
  AGGTTAGCCT TGTCTGTATA GTGAGACTGT TAGAAAAGAA AAGAAAAGAA AAGAAAAGAA
  AAGAAAAGAA AAGAAAAGAA AAGAAAAGAA AAGCAAGAAA GAAGAGGGCC AGAGAAATGC
  C
  TCAGTGGGTG AAGGCATTGC TGCCAAAACT TACACATTGA GTTTGAGTAC TGGAATTAAC
  AGGATAGGAG AGAATCAATT CTCAAAAGTT GACCTCTGAC CTCCACTCTC CCATTTACAT
  ACGGACACAC ACACAGCTCC TAAAGTATAG TTACACACAC ACACACACAC ACACACACAG
  AAAAAGCATG AAGGCAGGCT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321388829	CHEV_4_141218822	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230995770					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141390218 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15240	CpG island 15240	277 bp proximal
Gm54266	predicted gene, 54266	1188 bp upstream
Gm70264	predicted gene, 70264	1869 bp upstream
Plekhm2	pleckstrin homology domain containing, family M (with RUN domain) member 2	within coordinates
Rr603850	regulatory region 603850	698 bp proximal
Rr603851	regulatory region 603851	1201 bp proximal
Rr603852	regulatory region 603852	1301 bp proximal
Rr603853	regulatory region 603853	1982 bp proximal
Tssr40091	transcription start site region 40091	1280 bp upstream
Tssr40092	transcription start site region 40092	1334 bp upstream
Tssr44355	transcription start site region 44355	1092 bp downstream
Tssr44356	transcription start site region 44356	1156 bp downstream