rs230996338 SNP Detail

Summary

• ID
  rs230996338
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:7679035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCATCTTAA AAAAAAAAAA
  AAAAAAAAGG AAGTGAAGGA TGATTAAGAG GGTCACGCCC TCTGCCCCTC TAGGTTCTCT
  AGTTTGTTTT TTTTTTTTTT TTCCTCCCTG TCATCTGTGC AATGCACCTG CTCAGGTAGG
  ACTTTAAGAA CAAATAATTC TTGTGAGTCC ATCCAGTCTA GTATGTAAGT GGTAGCTTCA
  K
  AAAACCAAAA CTCGTATTAG TTGGGGGCAC ATAGAAGTTC TGCATAGTAA CTATCTCCCA
  CAGTTATCTC CTGACATAGC TAATCACCAT TGTGATTGTT TCATTAAAGT GTTTTGTTTT
  GTTTTAATAA TAGGCCTGAA TTACCGAGGG GATTCCTGAT TTAGTGTTGT TTCTTATAAT
  CAGGAGAAAC ACTGCTTAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356879319	MGP_WTSI_3_7613975	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230996338					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356879319	MGP_WTSI_3_7613975	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:7679035 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12955	CpG island 12955	533 bp distal
Gm16685	predicted gene, 16685	within coordinates
Il7	interleukin 7	215 bp upstream
Rr77757	regulatory region 77757	34 bp distal
Tssr28303	transcription start site region 28303	1270 bp downstream
Tssr28304	transcription start site region 28304	86 bp downstream
Tssr32541	transcription start site region 32541	383 bp upstream
Tssr32542	transcription start site region 32542	319 bp upstream
Tssr32543	transcription start site region 32543	271 bp upstream
Tssr32544	transcription start site region 32544	243 bp upstream
Tssr32545	transcription start site region 32545	210 bp upstream
Tssr32546	transcription start site region 32546	190 bp upstream