rs231002703 SNP Detail

Summary

• ID
  rs231002703
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:64699999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTAATCC TAATTTGTAG
  TTCAACAAAT GTCAAGTCAT CTGAAGTTAA GTCATTCCAG ATGGCCAAGT ACCTAGGGGG
  TCCAGTCTCA GGCGTGTAAT CTCAGTCTGC AGGAGGCTAA GGCAGGAAGA CTGAAAGTTC
  AAGGCCAGCC TGAACTACTT AGCACTATGG TGTCTCCAAC ACAGAGAAAA GCAAAAAAGA
  R
  TCCTACAGAG ACTTGTATAT GGGAAAGGGT TTTGTTCTTG TTGTTGTTGT TGTTTTGTTG
  TTTTTAAAAT TCTAGAATCT TATGTTGCTC TAAAATTCAG ATCATTCTGA GGCCTCAGTT
  TTACCTAATC ATCCTAAAAT AGAGTTCAAC GATGAAACCT GCTCAATAGA TCATGAGATT
  ATGATTGTCT GAGCTCACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322985869	CHEV_9_64640524	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231002703					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:64699999 () rs orientation: forward

Symbol	Name	Function Class
Gm36459	predicted gene, 36459	1738 bp downstream
Rr681317	regulatory region 681317	1705 bp distal
Rr681318	regulatory region 681318	1060 bp distal
Rr681319	regulatory region 681319	within coordinates
Rr681320	regulatory region 681320	1540 bp proximal
Tssr2909	transcription start site region 2909	1907 bp upstream
Tssr85624	transcription start site region 85624	1750 bp downstream
Tssr85625	transcription start site region 85625	1879 bp upstream
Tssr85626	transcription start site region 85626	1980 bp upstream
Tssr90157	transcription start site region 90157	1889 bp upstream