rs231008885 SNP Detail

Summary

• ID
  rs231008885
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94899276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAAC CTGTGGGCTG AGACCCCGCT
  Y
  CCCAGGGATC ATCTAAGACC ATCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323817414	CHEV_11_94869764	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231008885					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94899276 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3571	CpG island 3571	1156 bp proximal
Gm36385	predicted gene, 36385	929 bp downstream
Gm51875	predicted gene, 51875	within coordinates
Gm72634	predicted gene, 72634	within coordinates
Ppp1r9b	protein phosphatase 1, regulatory subunit 9B	1552 bp downstream
Rr454921	regulatory region 454921	691 bp distal
Rr454922	regulatory region 454922	62 bp distal
Rr454923	regulatory region 454923	872 bp proximal
Rr454924	regulatory region 454924	939 bp proximal
Rr454925	regulatory region 454925	1440 bp proximal
Rr454926	regulatory region 454926	1791 bp proximal
Samd14	sterile alpha motif domain containing 14	1429 bp upstream
Tssr104327	transcription start site region 104327	1993 bp downstream
Tssr104328	transcription start site region 104328	1314 bp upstream
Tssr104329	transcription start site region 104329	1402 bp upstream
Tssr104330	transcription start site region 104330	1448 bp upstream
Tssr104331	transcription start site region 104331	1486 bp upstream
Tssr104332	transcription start site region 104332	1510 bp upstream
Tssr104333	transcription start site region 104333	1516 bp upstream
Tssr104334	transcription start site region 104334	1625 bp upstream
Tssr104335	transcription start site region 104335	1650 bp upstream
Tssr104336	transcription start site region 104336	1726 bp upstream
Tssr104337	transcription start site region 104337	1794 bp upstream
Tssr104338	transcription start site region 104338	1827 bp upstream
Tssr104339	transcription start site region 104339	1847 bp upstream
Tssr104340	transcription start site region 104340	1916 bp upstream
Tssr104341	transcription start site region 104341	1934 bp upstream
Tssr110238	transcription start site region 110238	1843 bp downstream