rs231019170 SNP Detail

Summary

• ID
  rs231019170
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114269358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGGG CTCCGGAGCC TGACTCCCAA
  Y
  CCCGACTCTG ACTCCCGGCA GGCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321651943	CHEV_5_114581306	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231019170					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114269358 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16310	CpG island 16310	within coordinates
Gm73235	predicted gene, 73235	1388 bp downstream
Gm73237	predicted gene, 73237	583 bp upstream
Rr617829	regulatory region 617829	901 bp distal
Rr617830	regulatory region 617830	361 bp distal
Rr617831	regulatory region 617831	206 bp proximal
Tssr48056	transcription start site region 48056	921 bp downstream
Tssr48057	transcription start site region 48057	853 bp downstream
Tssr48058	transcription start site region 48058	119 bp downstream
Tssr48059	transcription start site region 48059	77 bp downstream
Tssr48060	transcription start site region 48060	913 bp upstream
Tssr52695	transcription start site region 52695	571 bp upstream
Tssr52696	transcription start site region 52696	289 bp downstream
Ung	uracil DNA glycosylase	within coordinates