rs231021238 SNP Detail

Summary

• ID
  rs231021238
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:88968136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCTTAAC CAAAAGGGCT
  GGGTTTAAAC AGAAAGTACT ACAAGGAAGT GACTCTTCCT TTCCTTGACA AGACAATTTT
  TTTCCTTTTT TTTTTTTTTT TTTGGTTGTT TTTTGTTGTT GTTATTTTAT TTCTTTACAT
  TTCAAATGTT ATCTCCCTTC CCAGTTTCCT TCCTGAAAAC CCCATATTCG GTCCCCCAGC
  Y
  CTTCTGGCTC CCCCACCCAA CCACCCACCA ACTCCTGCCT CACCATTCTA GCATTCCCCT
  ACACTGGGGG CATTGAGCTT TCACAGGACC AAGGGCTTCT CCTCGCATTG ATACCTAACA
  AGGCCCTTCT CTGCCACATA TATGGCTGGA GTCATGGGTC CCTCCATGTG TATTCTTTGG
  TTGATGGTTT AATCCCTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389409008	MGP_WTSI_13_88959622	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231021238					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389409008	MGP_WTSI_13_88959622	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:88968136 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5919	CpG island 5919	1192 bp proximal
Edil3	EGF-like repeats and discoidin I-like domains 3	1455 bp upstream
Rr483401	regulatory region 483401	965 bp proximal
Rr483402	regulatory region 483402	1242 bp proximal
Tssr120562	transcription start site region 120562	1457 bp upstream
Tssr120563	transcription start site region 120563	1526 bp upstream
Tssr120564	transcription start site region 120564	1565 bp upstream
Tssr120565	transcription start site region 120565	1577 bp upstream
Tssr120566	transcription start site region 120566	1589 bp upstream
Tssr120567	transcription start site region 120567	1652 bp upstream
Tssr120568	transcription start site region 120568	1662 bp upstream
Tssr120569	transcription start site region 120569	1691 bp upstream
Tssr120570	transcription start site region 120570	1715 bp upstream
Tssr120571	transcription start site region 120571	1733 bp upstream
Tssr120572	transcription start site region 120572	1865 bp upstream
Tssr120573	transcription start site region 120573	1899 bp upstream
Tssr120574	transcription start site region 120574	1926 bp upstream
Tssr123374	transcription start site region 123374	1757 bp downstream