rs231049676 SNP Detail

Summary

• ID
  rs231049676
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:75120158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGTGATT TTCGATGGAT
  TTGGGAGCCT CAACTGAGAT GCCTGTCTCC CTAAGGTTGT TGTCTTCGTC GTCCCTCCGG
  CCCTTCTTCC TGCTCAGCAT CTCACTTTTG ACCTATTTTC TACTGGATCT CTGGCATCCT
  CGCTTTCTCC CTGACGTTTC AGGTGAGTTT CTTCATTCCA CATGCACTGT ATGCACCTGC
  Y
  CCGTGCATCA CCCTGCTACT TGAGGGGAGG CACAGGAAGG CCATTTATCT CCTAAGGCAT
  CCTGTATGCC CTTCCATCGT TTTTTTTTTT TTTTTTTTTT TTTTTAAGAA AATTGCCTGA
  AATGAGAATT GTTTCTTTTC CAAAATTAAT GTTCTTGTGA GTTTAGTAGT CAAAACTATA
  TAGCATTTAA AGCTGGGTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350135788	MGP_WTSI_1_75140088	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231049676					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350135788	MGP_WTSI_1_75140088	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:75120158 () rs orientation: forward

Symbol	Name	Function Class
Cnppd1	cyclin Pas1/PHO80 domain containing 1	784 bp upstream
Cpgi410	CpG island 410	1447 bp distal
Cpgi411	CpG island 411	2 bp distal
Gm57175	predicted gene, 57175	1275 bp downstream
Retreg2	reticulophagy regulator family member 2	within coordinates
Rr29646	regulatory region 29646	within coordinates
Tssr7484	transcription start site region 7484	1809 bp downstream
Tssr7485	transcription start site region 7485	1716 bp downstream
Tssr7486	transcription start site region 7486	1031 bp downstream
Tssr7487	transcription start site region 7487	995 bp downstream
Tssr7488	transcription start site region 7488	772 bp downstream
Tssr7489	transcription start site region 7489	741 bp downstream
Tssr7490	transcription start site region 7490	717 bp downstream
Tssr7491	transcription start site region 7491	690 bp downstream
Tssr7492	transcription start site region 7492	677 bp downstream
Tssr7493	transcription start site region 7493	243 bp downstream
Tssr12350	transcription start site region 12350	1999 bp upstream
Tssr12351	transcription start site region 12351	1984 bp upstream
Tssr12352	transcription start site region 12352	1970 bp upstream
Tssr12353	transcription start site region 12353	1908 bp upstream
Tssr12354	transcription start site region 12354	1866 bp upstream
Tssr12355	transcription start site region 12355	1771 bp upstream
Tssr12356	transcription start site region 12356	1711 bp upstream
Tssr12357	transcription start site region 12357	1160 bp upstream
Tssr12358	transcription start site region 12358	1090 bp upstream
Tssr12359	transcription start site region 12359	789 bp upstream