rs231059646 SNP Detail

Summary

• ID
  rs231059646
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59439588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTGTGAACA TGTCTCTAGG TGTTTGGGCA
  AAACCAGTCT CCAGGAACCC TCACAGGTCA TTGCACAAAT CCACTGTTCA AGACATTTTT
  AAAACAACCT TTATCTCTAC TTCTCATGCC CTTCTGCAAA ATAAATATGT ATATATACTT
  W
  AAAAAAAAAC ATGATGCATG aaaaaacaac tatccaagac ttggacatgg gaaggaaaat
  tactgggtgt ctctttcagc atgcatggga gtaaatgcta tctaacccac tttccgtgga
  ttattcaatt caaaagtgta cttttatgaa                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321141041	CHEV_4_59452460	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231059646					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59439588 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14346	CpG island 14346	795 bp distal
Rr101075	regulatory region 101075	187 bp distal
Rr398291	regulatory region 398291	1979 bp upstream
Susd1	sushi domain containing 1	955 bp upstream
Tssr37430	transcription start site region 37430	1413 bp downstream
Tssr37431	transcription start site region 37431	550 bp upstream
Tssr41933	transcription start site region 41933	1283 bp upstream
Tssr41934	transcription start site region 41934	1162 bp upstream
Tssr41935	transcription start site region 41935	909 bp upstream