rs231061876 SNP Detail

Summary

• ID
  rs231061876
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:136139811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAATCTCAG ACTCAAGCTG GCTCCCAGGG
  AAGTTTCTAT CTGTGGTTCT GATGTCTTAA GGTCAGGTTC TGAAGCTGTT CTTAGCAGAG
  GGTTCTTTCC CATTCTCTAG GATGTCCCTT CTGCCATCCA GGAGGGGAGG CTAAGGACTC
  Y
  AACGTGCCTG CAACTCCCAG ACATGGATGC TCAGGTGTAG AGCTAGCCTA TGGACTGAAA
  CTGAAAGGAG TTATGCCCAA CCAGTTCCTC ACACTGGCAC ATTTCAAGGC TGGCTGCTTA
  CAAGAACTTA GCTATCCCCC ATTTTTTCTT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319995061	CHEV_1_138108650	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231061876					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136139811 () rs orientation: forward

Symbol	Name	Function Class
Inava	innate immunity activator	1458 bp downstream
Mroh3	maestro heat-like repeat family member 3	Intron
Rr419387	regulatory region 419387	745 bp proximal
Rr419388	regulatory region 419388	935 bp proximal
Tssr13921	transcription start site region 13921	742 bp downstream