rs231070771 SNP Detail

Summary

• ID
  rs231070771
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:114582673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACATGGCT GTGGGAAAGC
  CATCATTCGT GCTGGGTGCA GAGTTCCCGG TGTGTCCGCT GTTAGATCAC CCTGCTCCTG
  TCCATGACCT CTTACCCACT GCTCTGTAAG CCCAATCACC TCATTGGTTC CCAGAGTGAA
  CTTTGATGGA ATGCATCTCA GGTTGTCACT GGGACCTGGG GGGTTGTGTG TGTGTGTGTG
  T
  GTGGGGGGGG GGGTTGGACT TTAAGTCTGT CCCAGAGAAG GAATTTTGGC AACACCACGA
  GCTGGTAACT CCCAGACTTG TTATCCCAGC TCAGATTTCT CCTGTGCTCT AGACACATAT
  TTCCAAAGAT TTAGAGGACT TTTTTTTATG GCTGATGTAT CTGAAGTGCA GGAAACTTCA
  TAGGCACTGA GTGCACACCA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ
ss376095439	MGP_WTSI_8_116379941	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ
rs231070771					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376095439	MGP_WTSI_8_116379941	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:114582673 () rs orientation: forward

Symbol	Name	Function Class
D8Mit318	DNA Segment, Chr 8, Massachusetts Institute of Technology 318	240 bp proximal
Rr174140	regulatory region 174140	1128 bp proximal
Rr179523	regulatory region 179523	1673 bp distal
Rr179524	regulatory region 179524	673 bp distal
Tssr82999	transcription start site region 82999	1147 bp upstream
Tssr83000	transcription start site region 83000	1117 bp upstream
Tssr83001	transcription start site region 83001	1099 bp upstream
Tssr83002	transcription start site region 83002	1086 bp upstream