rs231071097 SNP Detail

Summary

• ID
  rs231071097
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:3688649 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              ACAAGCCAGC ACAAATATAC
  TGTATACACT ACAACTCACT AGTAGCTGTC TCACTCTTCA GATCAATTGC CGTGGTATCA
  CAGTGCTTGT GTTTCAGTGA TCCCTACTTT ACTTATTGAT GGTCCTGATG TCCAAGTGTC
  CAAGAGTAAG GATACATAGG CCTTTTATTT CACTGTATTG TTAGAACAGT TAATTGAATA
  W
  ATATATATAT ATATATATAT TGTTTTTCGA AACAGGGTTT CTCTGTGTAT CCCTGGCTAT
  CCTGGAGCTC ACTCTGTAGA ACAGGCTGAA CTTGAACTCA GAAATCCTCC TGCCTCTGCC
  TCCCAAGTGC TGGGATTAAA GGCATGCGCC ACCACTGCCC AGCTAATATA TATATATATA
  TATATATATA TATATATATA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323242356	CHEV_10_6607892	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231071097					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:3688649 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi1270	CpG island 1270	1567 bp proximal
Gm30164	predicted gene, 30164	within coordinates
Plekhg1	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	1715 bp upstream
Rr222570	regulatory region 222570	1310 bp distal
Rr224667	regulatory region 224667	1151 bp proximal
Tssr92214	transcription start site region 92214	1604 bp upstream
Tssr92215	transcription start site region 92215	1699 bp upstream
Tssr92216	transcription start site region 92216	1804 bp upstream
Tssr92217	transcription start site region 92217	1995 bp upstream