rs231073402 SNP Detail

Summary

• ID
  rs231073402
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126622575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAATGGCA AGAAACATGT
  TCCATACCCC AGACTTTTCA ACTATTTCCC TATTTCCCCT GGGACACAGC CGTTACTTCC
  TATCTGGTCC CCAGAGGCTT CGGCCTGCCT GCTTACCCAG ACTGAGCATG TCCATACTGC
  CCTCTCTGGA TCCCAAGGCT CCCTAATCTG AGTGACAGAC TGGCATCCCT GGCCTTCCTG
  Y
  GATCCCCTAT TGGGCCCTTT GAGTTCCCTT GTCCCACACA TCCCATGCTG CCCCCCCCAG
  CCATGTCCCA CACCTTGCCT GGTGGGTGCA GGGGTCCCCC TCAGCAGGTA GGCTGTGGCT
  GGGGGGCATC TCCCGGGATA GGAGGGGCGG CCCCCCCCAG ATGGGTCTGC ATGTGGCCGG
  CCAGCTGGGC AGGGGTCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373079233	MGP_WTSI_7_134166917	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231073402					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373079233	MGP_WTSI_7_134166917	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126622575 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19726	CpG island 19726	1974 bp distal
Cpgi19727	CpG island 19727	1777 bp proximal
Gm31749	predicted gene, 31749	1868 bp upstream
Gm53372	predicted gene, 53372	1139 bp downstream
Maz	MYC-associated zinc finger protein (purine-binding transcription factor)	within coordinates
Rr166710	regulatory region 166710	within coordinates
Rr368440	regulatory region 368440	959 bp upstream
Tssr69154	transcription start site region 69154	1989 bp downstream
Tssr69155	transcription start site region 69155	1956 bp downstream
Tssr74903	transcription start site region 74903	1808 bp upstream
Tssr74904	transcription start site region 74904	1768 bp upstream
Tssr74905	transcription start site region 74905	1496 bp downstream
Tssr74906	transcription start site region 74906	1678 bp downstream
Tssr74907	transcription start site region 74907	1743 bp downstream