rs231075966 SNP Detail

Summary

• ID
  rs231075966
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72182513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGCGTCCC CCGCCCCGCG
  CGGCCGCCCG CCCGCCCGCC CGCGAAGGCC CTCCCGCGCG GCCGCGCCGC CGCACTCCGG
  GGGCGCAGGG TGGGGGTCTC GGGCCGCGGC GCGTCGGCGA GAGCGCCCGG GCCGGGCAGG
  GCAGGGGCCG GCTGCGCATG GGGCCGGGCC CGCCATCTTG CCGGGCCTGG CGCGGGAGGG
  W
  TCCCGGCGCG ACGAGGCGAG GCGGCCGGCG GCGCGGCGGC CCACAGTACA GGGCCGCCCA
  GCCGTCGCCT CGCCTCGTCG CCTCGCCACC GCGCAGATCC TCCCATCGCT TTCTCAGCCC
  GGCTGTGCTC TCGGGGGACG ACTCCCCTCG GTCCTTTGTA CCTTGTCCGC GGGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378015314	MGP_WTSI_9_72123038	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231075966					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378015314	MGP_WTSI_9_72123038	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72182513 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22014	CpG island 22014	within coordinates
Gm27253	predicted gene 27253	375 bp upstream
Rr197186	regulatory region 197186	913 bp distal
Rr206702	regulatory region 206702	within coordinates
Rr368823	regulatory region 368823	124 bp upstream
Tssr85968	transcription start site region 85968	345 bp downstream
Tssr85969	transcription start site region 85969	318 bp downstream
Tssr85970	transcription start site region 85970	281 bp downstream
Tssr85971	transcription start site region 85971	218 bp downstream
Tssr85972	transcription start site region 85972	205 bp downstream
Tssr85973	transcription start site region 85973	256 bp upstream
Zfp280d	zinc finger protein 280D	within coordinates