AGGTTTGAAT GAAACCAGTG CAGGTGACTA GGAGACAAAG GCGCCTCGCC GCCGCCAAGC TTTTGTGCTT AGGCTCAGAA CGGCTTGTTA GTATCCTGCC TGACAACTTT GTGAGCTTTT TCTATCCACT GGGAAGGCCT TTTGTGGCGT CCTATACCTT CCTTTCTGAC TTTCTTTTTG CACCTCCACA TTTGGCAAAC M CGAAAGGAAT GGCTAAATCA GAACTCATAT ACCCGGAACC TAGGGAGACA GGATCAGGGG AGTGGAAGGT GGGAGGAGGA GGGAGTAAGA CTGAAAAAAT CCGCTAGTAC CTCTACTGCT ACGCATGCTT CTCTTTCATC TCTGCCTTCT CCTCTGGGTC CCACCTTACC GTATGCCATG CCACAGTAAC ATCCCACTAC M = A/C Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss355559554 | MGP_WTSI_2_125550882 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | C | A | A | A | A |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs231083124 | SNP | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | A | C | A | A | A | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss355559554 | MGP_WTSI_2_125550882 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | A/C |
Location: Chr2:125567066 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi12200 | CpG island 12200 | 1512 bp distal | ||||||
D2Dcr70 | DNA Segment, Chr 2, Derry C. Roopenian 70 | 490 bp proximal | ||||||
D2Mit398 | DNA segment, Chr 2, Massachusetts Institute of Technology 398 | 448 bp proximal | ||||||
Rr367290 | regulatory region 367290 | 408 bp downstream | ||||||
Rr564270 | regulatory region 564270 | 1269 bp distal | ||||||
Rr564271 | regulatory region 564271 | 1266 bp distal | ||||||
Rr564272 | regulatory region 564272 | within coordinates | ||||||
Shc4 | SHC (Src homology 2 domain containing) family, member 4 | 998 bp upstream | ||||||
Tssr26008 | transcription start site region 26008 | 1609 bp upstream | ||||||
Tssr26009 | transcription start site region 26009 | 1455 bp upstream | ||||||
Tssr26010 | transcription start site region 26010 | 1423 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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