rs231092457 SNP Detail

Summary

• ID
  rs231092457
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12771983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGCCTGCC GCGCTGCTCC
  GCGCCCACCG CACGGCCCGC CTCGGCTCCC GTAGTCCGGC TCTGGCCTGG CTAAGCACCT
  CGGGTGTGTT CGGAGGTGCT CGGGAGGACT CGGCGATCCT CGGCCCCGCC CCTGCTACGG
  TCCCCGCGCC CTCCTCCCCC TCTTCCGCTT GGGTCTGGTG AGGCCCCGCT GCGGCTGCGG
  M
  CGCCGGCCTT TACAGGTCCG CCGCTCTCCC GCCTACTTGC TCCCTCTGCT AGGAGGCTGC
  GGTGAGGTGG AAGGAGGAGG CGGTAGCCGC GCTTGCGGCG GCAGGGTACC GCAGGGTACC
  GGTGGAGGCT CAGCTTCCGC GGCAGGCGCG GCTTCGATGC GGAGGTCGGC AACGGCCTCG
  GGCGCCCCGC CGCTTCGGCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss370654982	MGP_WTSI_7_13623405	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	C	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs231092457					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	C	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370654982	MGP_WTSI_7_13623405	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12771983 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18335	CpG island 18335	within coordinates
Gm71833	predicted gene, 71833	within coordinates
Rr400106	regulatory region 400106	157 bp upstream
Rr642445	regulatory region 642445	68 bp distal
Rr642446	regulatory region 642446	390 bp distal
Rr642447	regulatory region 642447	within coordinates
Rr642448	regulatory region 642448	207 bp proximal
Rr642449	regulatory region 642449	1710 bp proximal
Tssr64535	transcription start site region 64535	356 bp downstream
Tssr64536	transcription start site region 64536	9 bp downstream
Tssr70651	transcription start site region 70651	1394 bp upstream
Tssr70652	transcription start site region 70652	389 bp upstream
Tssr70653	transcription start site region 70653	364 bp upstream
Tssr70654	transcription start site region 70654	224 bp upstream
Tssr70655	transcription start site region 70655	105 bp upstream
Tssr70656	transcription start site region 70656	87 bp upstream
Tssr70657	transcription start site region 70657	145 bp downstream
Tssr70658	transcription start site region 70658	255 bp downstream
Ube2m	ubiquitin-conjugating enzyme E2M	within coordinates