rs231096949 SNP Detail

Summary

• ID
  rs231096949
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:8757798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTAAAGA TAGACACTAC
  ACACTGCCTT AGAGTAACAG GATGGGTAAA GACTCTCCAG TCAAACGAGA CAGGGGACTA
  GGCAGCAACT GGCATTGCCG TTCTAATATA AGTCAAAATA GACTAGAAGC GACAAAGAAG
  GACACTTAAT TCTAACCAAG AGAACAATTA AGCAAGACAT TACTATCCTA AACATATACG
  Y
  ACCAAACACG GGCTCACCCG ATTTCATTTA AAAATGTACT AGCGGACTGA AAGACACAGC
  CTGGCACCAA CCTGTTCATT CTATGTGAGT ACAATTTCCC AGTTCGTTCC AGTTTCTCCA
  ATAGACAATT CACCTAGACA GACAGCAGAC AGAACCCCGA GAATTAGATG GTTATCAGCC
  ATCAAATGGA CTTAGGAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403018280	MGP_WTSI_X_8468685	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231096949					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403018280	MGP_WTSI_X_8468685	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:8757798 () rs orientation: forward

Symbol	Name	Function Class
B630019K06Rik	RIKEN cDNA B630019K06 gene	823 bp upstream
Cpgi22597	CpG island 22597	819 bp proximal
Gm54079	predicted gene, 54079	within coordinates
Rr689805	regulatory region 689805	333 bp proximal
Rr689806	regulatory region 689806	1383 bp proximal
Tssr160504	transcription start site region 160504	795 bp upstream
Tssr160505	transcription start site region 160505	817 bp upstream
Tssr160506	transcription start site region 160506	884 bp upstream
Tssr160507	transcription start site region 160507	1462 bp upstream
Tssr162869	transcription start site region 162869	1353 bp downstream
Tssr162870	transcription start site region 162870	1379 bp downstream