rs231108016 SNP Detail

Summary

• ID
  rs231108016
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:3252361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATTGTGCT GAAAGGACCC
  AGATATATCT GTCTTTTGTG AGACTATTCC CAGGCCTAGC AAACACAGAA GTGGATGCTC
  ACAGTCAGCT ATTGGATGGT TCATAGGGCC CCCAATGGAG GAGCTAGAGA AAGTATTTAA
  GGAGCTAAAG GGATCTGCAA ACCTATACAT GGAACAACAA TATTAACTAA CCAGTACCTG
  R
  AGCTCTTGAC TCTAGCTGCA TATGTATCAA AATATGACCT AGTCGGCCAT CACTGGAAAG
  AGAGACCCAT TGGACTTGCA AACTTTATAT GCCCCAGTAC AGTGGAATGC CAGGGCCAAA
  AAGTGGGAGC AGGTGCGTAG AGGAGTGGGG GGAGGGTATG GGGAACTTTT GTGATAGCAT
  AGGAAATGTA AATGAGGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320633050	CHEV_3_3187301	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231108016					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:3252361 () rs orientation: forward

Symbol	Name	Function Class
Gm37338	predicted gene, 37338	732 bp upstream
Tssr28246	transcription start site region 28246	623 bp upstream
Tssr28247	transcription start site region 28247	691 bp upstream
Tssr28248	transcription start site region 28248	715 bp upstream
Tssr28249	transcription start site region 28249	756 bp upstream
Tssr28250	transcription start site region 28250	777 bp upstream
Tssr28251	transcription start site region 28251	799 bp upstream
Tssr28252	transcription start site region 28252	811 bp upstream
Tssr28253	transcription start site region 28253	823 bp upstream