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rs231119605 SNP Detail
Summary
  • ID
    rs231119605
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr9:58155411 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GTGTCCTTAG CACATGAACG
    CATGAACAAA ATGTGTCTGC AAATGTAACA AAATAGTATT CACCCTGAAA GAGGAATGAA
    ATCCTGATAC ATTCAACAAC CTGGATGAAC CTTGAAGACA TGGTGAAATA ATATGCCTGC
    CATAAAATTA GAAATATTGT GTAATTCCAG TCATGTCATA TAAAATAATA ATAGTTAGTT
    Y
    ATAGGTATAG AAGGTGGAGC TACTGTTCAA AGAGCTCAAT ACCATGGTGC CTGGCACATG
    AGAAATACCC ATAAGTCTAA TCCCAGCACT CAGGAGGCAG AGGCAGGCGA TTTCGAGGCC
    AGCCTGGTTC ACAAAGTGAG TTCCAGGACA GCCAGGGCTA TACAGAGAAA CCCTGTCTCG
    AAAAACCAAA AAAAAAAAAA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss377704959 MGP_WTSI_9_58095935 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs231119605 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss377704959 MGP_WTSI_9_58095935 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr9:58155411 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi21844 CpG island 21844 753 bp distal
Pml promyelocytic leukemia within coordinates
Rr679899 regulatory region 679899 1653 bp distal
Rr679900 regulatory region 679900 957 bp distal
Rr679901 regulatory region 679901 889 bp distal
Rr679902 regulatory region 679902 1595 bp proximal
Rr679903 regulatory region 679903 1990 bp proximal
Tssr89888 transcription start site region 89888 987 bp upstream
Tssr89889 transcription start site region 89889 663 bp upstream
Tssr89890 transcription start site region 89890 1501 bp downstream
Tssr89891 transcription start site region 89891 1533 bp downstream
Tssr89892 transcription start site region 89892 1574 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory