rs231126262 SNP Detail

Summary

• ID
  rs231126262
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:48043647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGACATTC TAAGCCATCC
  ACCCACCCAT CCCGGCACTG CTGGTAGAGG GTGGGTGGGA GACCCTCCTC CAAAGTCATA
  GGTCACCTAT GCAGCAGTCT GGCAGCCCAG CCAACTCCGA AGAAGAGAGG GTATGGCCAC
  ACAGGGACAG TCAGCACATA TGATCTCAGA CACCAGGGAG GGCCCCGGTA ATCCAACGCT
  M
  CAGGTTAGAA GCTGTTTCAC CATCCTTGCG ACAGCCAGTG AGTGGCTCTC TGACTTTCAG
  TGTGTCTAGA GCCTTCCTTG AGGATTTGAG ATGGCCTTGA ATAGACTCTA GGGTCCCCTT
  ACTTCCCTTA AGAACAACGT GGCCTCTGTA TGCAGCCACC CGTGCCTCTG TGGTTGGAAG
  CCCCTCTGAC CGCCCTGATC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398353032	MGP_WTSI_17_47869671	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231126262					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398353032	MGP_WTSI_17_47869671	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48043647 () rs orientation: forward

Symbol	Name	Function Class
Pgc	progastricsin (pepsinogen C)	Intron
Rr528106	regulatory region 528106	1992 bp distal
Tssr5149	transcription start site region 5149	1234 bp downstream
Tssr145022	transcription start site region 145022	1994 bp downstream
Tssr145023	transcription start site region 145023	1956 bp downstream
Tssr145024	transcription start site region 145024	1854 bp downstream
Tssr145025	transcription start site region 145025	1491 bp downstream
Tssr145026	transcription start site region 145026	1251 bp downstream
Tssr145027	transcription start site region 145027	310 bp downstream
Tssr145028	transcription start site region 145028	269 bp downstream
Tssr145029	transcription start site region 145029	252 bp downstream
Tssr145030	transcription start site region 145030	232 bp upstream
Tssr145031	transcription start site region 145031	248 bp upstream
Tssr145032	transcription start site region 145032	256 bp upstream
Tssr145033	transcription start site region 145033	337 bp upstream
Tssr145034	transcription start site region 145034	339 bp upstream
Tssr145035	transcription start site region 145035	1029 bp upstream
Tssr145036	transcription start site region 145036	1037 bp upstream
Tssr145037	transcription start site region 145037	1081 bp upstream
Tssr145038	transcription start site region 145038	1091 bp upstream
Tssr145039	transcription start site region 145039	1456 bp upstream
Tssr145040	transcription start site region 145040	1480 bp upstream
Tssr145041	transcription start site region 145041	1517 bp upstream
Tssr145042	transcription start site region 145042	1535 bp upstream
Tssr145043	transcription start site region 145043	1590 bp upstream
Tssr145044	transcription start site region 145044	1607 bp upstream
Tssr145045	transcription start site region 145045	1617 bp upstream
Tssr145046	transcription start site region 145046	1636 bp upstream
Tssr145047	transcription start site region 145047	1684 bp upstream
Tssr145048	transcription start site region 145048	1716 bp upstream
Tssr148469	transcription start site region 148469	1959 bp upstream
Tssr148470	transcription start site region 148470	284 bp upstream
Tssr148471	transcription start site region 148471	262 bp upstream
Tssr148472	transcription start site region 148472	248 bp upstream
Tssr148473	transcription start site region 148473	234 bp upstream
Tssr148474	transcription start site region 148474	216 bp upstream
Tssr148475	transcription start site region 148475	305 bp downstream
Tssr148476	transcription start site region 148476	333 bp downstream
Tssr148477	transcription start site region 148477	364 bp downstream
Tssr148478	transcription start site region 148478	1076 bp downstream
Tssr148479	transcription start site region 148479	1114 bp downstream
Tssr148480	transcription start site region 148480	1592 bp downstream
Tssr148481	transcription start site region 148481	1622 bp downstream
Tssr148482	transcription start site region 148482	1753 bp downstream