rs231139662 SNP Detail

Summary

• ID
  rs231139662
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:42774077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTATGAGCT CCCAAGTCTG
  TACACAAGTT CAGGATGAAC TGAAAGCTGC CCGTTCATCT CACTGTGTAA CCAACTCAGC
  AGTCAGCTTG CCTTTTCTCA CCCGGGTGAA CAGCGCTACC TTGAGTTCCA TCTCCTGGAT
  GTTCTGGGGA AGTCCACAGC TACACACCAT CTGCACTGTG GACTCCGGGG CCCAGTTTTA
  T
  AAAGCTGCCC TGAGCACACA CCACACAGAG CACTCGGCAA CACACATGGC CTTCACTTAA
  ATCCCAGCAG AAGTGTCTCC AATTGTGACA AAGTTAATGT CTTCAGGAGC TGGCGAGATG
  GCTCAGTCAG CAAAGCGCAA GCCATACAAG CATGAGGGCC TGAGTTTGAT CCCCAGACTC
  CTGTTCATTT AAAAAAAAAA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322936131	CHEV_9_42670864	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231139662					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:42774077 () rs orientation: forward

Symbol	Name	Function Class
Gm55338	predicted gene, 55338	652 bp upstream
Gm67530	predicted gene, 67530	within coordinates
Grik4	glutamate receptor, ionotropic, kainate 4	within coordinates