rs231151426 SNP Detail

Summary

• ID
  rs231151426
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:37847427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCACAAAA AGAGTAAAGC
  TGCCTGCACA CTCCCCCTTT CACACAATGT GGGCTCATAC AACCCGGTTT TGGGTCTCTT
  CTCGTTTGCA CGTAACTTAC TTCTTCATCC TCCCGTGGCC CTCCCACGAT CTTACTCCTT
  TACCCATTTA AGTCTCCAGT AGTAAAAGCA GTTTTCCAAG CAGTTTCTTA ATTAATCAGG
  Y
  TGGGTAGACT GGGCAGAGCC CCCGCCCCTT GGGCGGGGCC ATAGCGGCGG GCGGAACCCG
  ATGCCTGCTC TGGCTCCTTA ACAAATGATT CCTTTACAAT CTACAGAAGA GAGACACACA
  CACAGCGAGC CAATCAGCGG CCGCGGTCCT CGCGTCCGGC GGGGCTAGCC CCGCCCACTC
  CCAACCTCCC GCGGGGGCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367996717	MGP_WTSI_6_37820492	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	T	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231151426					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	T	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367996717	MGP_WTSI_6_37820492	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:37847427 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17305	CpG island 17305	within coordinates
Rr368051	regulatory region 368051	1018 bp upstream
Rr399615	regulatory region 399615	62 bp upstream
Rr628726	regulatory region 628726	within coordinates
Rr628727	regulatory region 628727	248 bp proximal
Rr628728	regulatory region 628728	990 bp proximal
Trim24	tripartite motif-containing 24	319 bp upstream
Tssr55624	transcription start site region 55624	216 bp upstream
Tssr55625	transcription start site region 55625	294 bp upstream
Tssr55626	transcription start site region 55626	401 bp upstream
Tssr55627	transcription start site region 55627	436 bp upstream
Tssr55628	transcription start site region 55628	470 bp upstream
Tssr55629	transcription start site region 55629	503 bp upstream
Tssr60360	transcription start site region 60360	25 bp upstream
Tssr60361	transcription start site region 60361	835 bp downstream
Tssr60362	transcription start site region 60362	985 bp downstream