rs231153208 SNP Detail

Summary

• ID
  rs231153208
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101899521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGGAGGC CGGAGGAAGT
  GGGGGGGTGG GGGCCGGGCC GGCAGGGCCG GGGCGGGGCG CGGGGGCGGG CCGGCCGGGG
  CGGGGCGGAC TAGGAAGTCG GAGGCCTCCC CCACCCTCCA GCCTCGGGTT TTCTGCAAGC
  TTTGCCCTCC GCACAGTCCC GCACACCCTG CTTCTCTCCA CTCTTCGCCC CGTGAGCCCT
  R
  AGACCCCTTG AGTCTGGCCT CTCAAGGTCA GGTCTCCCCG CTTTCACTTG GCATCTCCCC
  CCCACCCCCC AGCAGGGGCC CTAAGCTAGG CGCTGGGCAT TTGTTCTCTT CCTAGTATCT
  CACTCCCCGC CCCGCAGCCT CCGCGGGAAG GCTGAGAAAT GCCTTCCGCT CAGCCCGGGA
  ATCTAGAGGT AGCCGCGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322353656	CHEV_7_109398828	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231153208					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101899521 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	within coordinates
Rhog	ras homolog family member G	196 bp upstream
Rr652562	regulatory region 652562	237 bp distal
Rr652563	regulatory region 652563	within coordinates
Rr652564	regulatory region 652564	607 bp proximal
Tssr2354	transcription start site region 2354	38 bp downstream
Tssr68328	transcription start site region 68328	621 bp downstream
Tssr68329	transcription start site region 68329	600 bp downstream
Tssr68330	transcription start site region 68330	59 bp downstream
Tssr73939	transcription start site region 73939	940 bp upstream
Tssr73940	transcription start site region 73940	893 bp upstream
Tssr73941	transcription start site region 73941	840 bp upstream
Tssr73942	transcription start site region 73942	755 bp upstream
Tssr73943	transcription start site region 73943	228 bp upstream
Tssr73944	transcription start site region 73944	191 bp upstream
Tssr73945	transcription start site region 73945	176 bp upstream
Tssr73946	transcription start site region 73946	9 bp downstream
Tssr73947	transcription start site region 73947	152 bp downstream
Tssr73948	transcription start site region 73948	177 bp downstream
Tssr73949	transcription start site region 73949	213 bp downstream
Tssr73950	transcription start site region 73950	262 bp downstream