rs231163553 SNP Detail

Summary

• ID
  rs231163553
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:70730162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCATGCACA CACTCATGCG CACACACACA AGCACACACA
  TACATACGCA CACACGTGCA CATGCACTCA CACGCACACA CACAAGCACA CACACACACA
  Y
  ACGCATGCAT ACACACAAGC ACACACACAC ATGCACACAC ACACAAGCAC ACACACATGC
  ACACACAAGC ACACACACAC ACAGGGCCAC ATGCACTTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322699452	CHEV_8_72801411	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231163553					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70730162 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20447	CpG island 20447	824 bp proximal
Gm38427	predicted gene, 38427	within coordinates
Tssr2595	transcription start site region 2595	561 bp upstream
Tssr77724	transcription start site region 77724	589 bp upstream