rs231175441 SNP Detail

Summary

• ID
  rs231175441
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5820338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGGAAGG GGTTTCCCAG
  CGGGTCTAGG GGTCGCCAGA GTCCAGGAGC CTCAGTGCGG GCAGATCAAG GTACGGTGAC
  CTCGGGCACC CACCACTTCT CTCTGACTGC TCTGCTACTG CTGTCAGCCA GCTCCGGGGG
  ATCATACTGC TCGAGCTCCG GGATCCCCTT GCTGGGTGGT CCCCCGCCGT TGCCCTGTGC
  Y
  GAGTACATGT AGTCCAGACC CCCAAGTTTC CACTCGCCAG CCCTGTCCAC AAACACAGCG
  GCCATGCAGA CATTATTGTG GATGAGGTTG CAGTCGTTGA CCAGGAAGCT GAGGGCTTTC
  ACGATCTGGT GTAACCCCCA TGACAGCTCC TGCTCCTTCA GGCCACCTGC TTCTGCTCGT
  GCCTTGAGGT ATGTTCCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401662041	MGP_WTSI_19_5770310	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231175441					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401662041	MGP_WTSI_19_5770310	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5820338 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10479	CpG island 10479	192 bp proximal
Gm59602	predicted gene, 59602	1138 bp upstream
Gm59603	predicted gene, 59603	1160 bp downstream
Rr363624	regulatory region 363624	within coordinates
Rr405811	regulatory region 405811	955 bp upstream
Scyl1	SCY1-like 1 (S. cerevisiae)	within coordinates
Tssr157640	transcription start site region 157640	960 bp downstream
Tssr157641	transcription start site region 157641	1033 bp downstream
Tssr157642	transcription start site region 157642	1066 bp downstream
Tssr157643	transcription start site region 157643	1102 bp downstream
Tssr157644	transcription start site region 157644	1308 bp downstream