rs231188385 SNP Detail

Summary

• ID
  rs231188385
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:21375411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTTTACT GTAGAACTGC
  CTCAGATGAG CTGCCTAGCC TCACTGGGCC CTGTGTACTT ATCTATCAAC TGTCAGGATC
  GAAGTACTTT GTCTTTAGAG AATTATACAG CCATAAAATC CTGTAGCCTT TAATGCCTGC
  AAGCTTGAAA AGGGACAGAT GAAGACCCCT TCCTTCTTTG TTTCTACATG AATTCCCCCC
  G
  CCCCCCCCCC ACGTGTGTTT ATGATTCCTT TATAGATCCT ATCTTAAACT GCAGCAACTT
  TCCTACTTTC AGGACAATCT CATCTCCTCC TGATTCTGGC AGGATCCTAT TAGTAAGCTC
  TCAGATCAGC TTTGAATCTT TGCCACAGCA TTTTCTCAGA AGAAGAGGGC TCAGCAGATG
  CCACTTAGAG CCAATGAACC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C57BL/6J	C57BL/10SnJ	C57L/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J	WSB/EiJ
ss353322599	MGP_WTSI_2_21292227	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C57BL/6J	C57BL/10SnJ	C57L/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J	WSB/EiJ
rs231188385					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353322599	MGP_WTSI_2_21292227	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:21375411 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11264	CpG island 11264	1369 bp distal
Gm13327	predicted gene 13327	1489 bp upstream
Gpr158	G protein-coupled receptor 158	Intron
Rr552705	regulatory region 552705	1399 bp distal