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rs231200666 SNP Detail
Summary
  • ID
    rs231200666
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44130686 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          ATCAC CTTCATAATC CCCTCTTCTC
Y
TTGAGCCCCT CTATTGCCTC CTCTT                                      

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss641462038 FVB_NJ_7_51736632 EVA_MGPV3 EVA_MGPV3 f SNP T T T C T C C C T T T C C C C C C T C T C C C C T C C C T T T C T T C C C T C C T T C C C C C C T C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs231200666 SNP T T T C T C C C T T T C C C C C C T C T C C C C T C C C T T T C T T C C C T C C T T C C C C C C T C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss641462038 FVB_NJ_7_51736632 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44130686 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Rr646103 regulatory region 646103 1322 bp proximal
Tssr2228 transcription start site region 2228 1179 bp downstream
Tssr2229 transcription start site region 2229 904 bp downstream
Tssr2230 transcription start site region 2230 721 bp downstream
Tssr2231 transcription start site region 2231 594 bp downstream
Tssr2232 transcription start site region 2232 420 bp downstream
Tssr2233 transcription start site region 2233 375 bp downstream
Tssr2234 transcription start site region 2234 227 bp downstream
Tssr2235 transcription start site region 2235 405 bp upstream
Tssr66296 transcription start site region 66296 1856 bp downstream
Tssr66297 transcription start site region 66297 1832 bp downstream
Tssr66298 transcription start site region 66298 1777 bp downstream
Tssr66299 transcription start site region 66299 1757 bp downstream
Tssr66300 transcription start site region 66300 1734 bp downstream
Tssr66301 transcription start site region 66301 1718 bp downstream
Tssr66302 transcription start site region 66302 1677 bp downstream
Tssr66303 transcription start site region 66303 1668 bp downstream
Tssr66304 transcription start site region 66304 1663 bp downstream
Tssr66305 transcription start site region 66305 1624 bp downstream
Tssr66306 transcription start site region 66306 1570 bp downstream
Tssr66307 transcription start site region 66307 1521 bp downstream
Tssr66308 transcription start site region 66308 1504 bp downstream
Tssr66309 transcription start site region 66309 1454 bp downstream
Tssr66310 transcription start site region 66310 1385 bp downstream
Tssr66311 transcription start site region 66311 1362 bp downstream
Tssr66312 transcription start site region 66312 1343 bp downstream
Tssr66313 transcription start site region 66313 1333 bp downstream
Tssr66314 transcription start site region 66314 1315 bp downstream
Tssr66315 transcription start site region 66315 1308 bp downstream
Tssr66316 transcription start site region 66316 1243 bp downstream
Tssr66317 transcription start site region 66317 1227 bp downstream
Tssr66318 transcription start site region 66318 1186 bp downstream
Tssr66319 transcription start site region 66319 1158 bp downstream
Tssr66320 transcription start site region 66320 1134 bp downstream
Tssr66321 transcription start site region 66321 1110 bp downstream
Tssr66322 transcription start site region 66322 1094 bp downstream
Tssr66323 transcription start site region 66323 1056 bp downstream
Tssr66324 transcription start site region 66324 1003 bp downstream
Tssr66325 transcription start site region 66325 962 bp downstream
Tssr66326 transcription start site region 66326 952 bp downstream
Tssr66327 transcription start site region 66327 932 bp downstream
Tssr66328 transcription start site region 66328 914 bp downstream
Tssr66329 transcription start site region 66329 875 bp downstream
Tssr66330 transcription start site region 66330 862 bp downstream
Tssr66331 transcription start site region 66331 848 bp downstream
Tssr66332 transcription start site region 66332 815 bp downstream
Tssr66333 transcription start site region 66333 780 bp downstream
Tssr66334 transcription start site region 66334 774 bp downstream
Tssr66335 transcription start site region 66335 763 bp downstream
Tssr66336 transcription start site region 66336 749 bp downstream
Tssr66337 transcription start site region 66337 733 bp downstream
Tssr66338 transcription start site region 66338 649 bp downstream
Tssr66339 transcription start site region 66339 617 bp downstream
Tssr66340 transcription start site region 66340 550 bp downstream
Tssr66341 transcription start site region 66341 501 bp downstream
Tssr66342 transcription start site region 66342 472 bp downstream
Tssr66343 transcription start site region 66343 446 bp downstream
Tssr66344 transcription start site region 66344 289 bp downstream
Tssr66345 transcription start site region 66345 252 bp downstream
Tssr66346 transcription start site region 66346 180 bp downstream
Tssr66347 transcription start site region 66347 162 bp downstream
Tssr66348 transcription start site region 66348 117 bp downstream
Tssr66349 transcription start site region 66349 88 bp downstream
Tssr66350 transcription start site region 66350 83 bp downstream
Tssr66351 transcription start site region 66351 59 bp downstream
Tssr66352 transcription start site region 66352 within coordinates
Tssr66353 transcription start site region 66353 32 bp upstream
Tssr66354 transcription start site region 66354 46 bp upstream
Tssr66355 transcription start site region 66355 73 bp upstream
Tssr66356 transcription start site region 66356 90 bp upstream
Tssr66357 transcription start site region 66357 104 bp upstream
Tssr66358 transcription start site region 66358 116 bp upstream
Tssr66359 transcription start site region 66359 142 bp upstream
Tssr66360 transcription start site region 66360 154 bp upstream
Tssr66361 transcription start site region 66361 180 bp upstream
Tssr66362 transcription start site region 66362 212 bp upstream
Tssr66363 transcription start site region 66363 229 bp upstream
Tssr66364 transcription start site region 66364 262 bp upstream
Tssr66365 transcription start site region 66365 282 bp upstream
Tssr66366 transcription start site region 66366 302 bp upstream
Tssr66367 transcription start site region 66367 330 bp upstream
Tssr66368 transcription start site region 66368 352 bp upstream
Tssr66369 transcription start site region 66369 386 bp upstream
Tssr66370 transcription start site region 66370 428 bp upstream
Tssr66371 transcription start site region 66371 853 bp upstream
Tssr66372 transcription start site region 66372 1016 bp upstream
Tssr66373 transcription start site region 66373 1306 bp upstream
Tssr66374 transcription start site region 66374 1364 bp upstream
Tssr66375 transcription start site region 66375 1375 bp upstream
Tssr66376 transcription start site region 66376 1388 bp upstream
Tssr66377 transcription start site region 66377 1427 bp upstream
Tssr66378 transcription start site region 66378 1449 bp upstream
Tssr66379 transcription start site region 66379 1461 bp upstream
Tssr66380 transcription start site region 66380 1494 bp upstream
Tssr66381 transcription start site region 66381 1513 bp upstream
Tssr66382 transcription start site region 66382 1537 bp upstream
Tssr66383 transcription start site region 66383 1647 bp upstream
Tssr66384 transcription start site region 66384 1745 bp upstream
Tssr72202 transcription start site region 72202 1454 bp upstream
Tssr72203 transcription start site region 72203 1074 bp upstream
Tssr72204 transcription start site region 72204 474 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory