rs231217646 SNP Detail

Summary

• ID
  rs231217646
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107648573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAACTTAA TTCTGGAGAG
  AGCTGAAATT TTCCAGAAGG GAAACCAAAA ATGGATGACA ATTAGATGAG CAAAAGCTAG
  CAGCACTAGG GAGAAGGGGT TGGAGGAGTG GGAGGCAAGG GGTAAGGAGA TGGGGGCGGG
  GCTTGGGGGA GTGGGAGACA GGGTGTAAGG AGGGGGAGAT GGGGGCGGGG CTTGGGGTGG
  G
  GGAGTGGGAG ACGGGGCGGG GTGCGGATTG GGAGGCTATG ATGGATGGAA GTTGGGGGTG
  GGAGGCGGTT TAGTAATTAT CCCCAGAAAG AACAAAGTCT CTATAGAATT AGTTCTAGAA
  AAATATCTTC ACATCAAAGC TGCTATGTCT CCAGAACAAG AGGACCCAAT ACATGCCCAG
  CACCATGACT AGAAACAAAC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362768574	MGP_WTSI_4_107463981	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231217646					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362768574	MGP_WTSI_4_107463981	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107648573 () rs orientation: forward

Symbol	Name	Function Class
4933424M12Rik	RIKEN cDNA 4933424M12 gene	1454 bp downstream
Gm69341	predicted gene, 69341	within coordinates
Lrp8os3	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor, opposite strand 3	1773 bp downstream