rs231221328 SNP Detail

Summary

• ID
  rs231221328
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100580086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gagcgctta ctgctcctgc agaggacctg
  agctcagttc ctagcagcca tgtTCTTAAC CCTGCAGACC CCGCACTTCA CACACACAAA
  GATGCACACA CGTACACATA GTTAAAAACG ATAAAAACGA ACTTTTTTTG TTTGTTTTtt
  K
  ttgttgttgt tgttgttTTC CTTTGtttgt ttctttcgag acagggtttc tctgtatagc
  cctggctgtc ctggaactca ctttgtagac caggctggcc ttgaactcag aaatcctcct
  gcctctgcct cccaagtgct gggatcaaag                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325083843	CHEV_15_100512636	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231221328					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100580086 () rs orientation: forward

Symbol	Name	Function Class
Cela1	chymotrypsin-like elastase family, member 1	within coordinates
Gm62586	predicted gene, 62586	within coordinates
Rr301613	regulatory region 301613	715 bp proximal
Rr301614	regulatory region 301614	1715 bp proximal
Rr312498	regulatory region 312498	within coordinates
Tssr136477	transcription start site region 136477	941 bp upstream
Tssr136478	transcription start site region 136478	620 bp upstream
Tssr136479	transcription start site region 136479	286 bp upstream
Tssr136480	transcription start site region 136480	274 bp upstream
Tssr136481	transcription start site region 136481	254 bp upstream
Tssr136482	transcription start site region 136482	248 bp upstream
Tssr136483	transcription start site region 136483	231 bp upstream
Tssr136484	transcription start site region 136484	164 bp upstream
Tssr136485	transcription start site region 136485	134 bp upstream
Tssr136486	transcription start site region 136486	627 bp downstream
Tssr136487	transcription start site region 136487	715 bp downstream
Tssr136488	transcription start site region 136488	743 bp downstream
Tssr136489	transcription start site region 136489	775 bp downstream
Tssr136490	transcription start site region 136490	804 bp downstream
Tssr136491	transcription start site region 136491	1097 bp downstream