rs231240477 SNP Detail

Summary

• ID
  rs231240477
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165507121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGCAGAG AACCTGGGGT
  TCAGATCCCA GCACCCACAT GGGTGGCTCC CAAACCTCTA TAACTCTAGC GCCGACGAAT
  TCGACGCCCT CTTCTGGACT CTGGGGGTAC TGCATGCACA GGGTGCACAG ATAAACAAGC
  AAAACACTCA TACACATAGG AAAAAAAATA AATCATTTTT AAAAAGAAAT CGAATGAGGG
  K
  GTGTGTGCAG ACTATCTGTC AGCCTGAGTG TTCTATAAAT GCAAAGGTGT TTGGAAGCTA
  TCCCGAAAAG GTGCAAGCTG CACAGGATGT TAAGGGGAGA CTCTTGACCT GGATCCTACC
  ACCCAAGGAG AGACTGCAAA AACCAAGGCA GGGGAGCAGA CGTCACAGTG CTGCCCTCTA
  GAGAGAGCGC TGGACGTCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320087046	CHEV_1_167609683	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231240477					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165507121 () rs orientation: forward

Symbol	Name	Function Class
Rcsd1	RCSD domain containing 1	within coordinates
Rr13801	regulatory region 13801	within coordinates
Rr13802	regulatory region 13802	1480 bp proximal
Tssr14776	transcription start site region 14776	709 bp upstream
Tssr14777	transcription start site region 14777	612 bp upstream