rs231242720 SNP Detail

Summary

• ID
  rs231242720
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:27385578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCCACTG ATACTCTCTT
  GTGTGATCAG GTTTTTACAA AAAAATACAT AGTTTTCAAT AAATAATGCT TAATTTTACA
  ACTTTGATAC AGCAACGTCA TACAGTTTCA ACACACTACA CTCTGCATGC TAGATAACCT
  CTACCAGAAG ACATGACTTC ACCATGCATT TGCTGCCCTA GTGCTACGGG ACACTTACGT
  R
  GTCCCCCAGC GCACTGCCTC AGGTAGCTTC TCCTTCTCTC TGTCTGACAG CAACAGGTCC
  TGCGCTGGCA TGCAAACTCT ATAAAAGTCC CCCCATAACC CACTCAGACT TCTAAACAAA
  AGGGCTTTCC AGCTATTCCT CTCCCAAACC TGGAGCAGCT GTGAAAGTTG CTTTTTTTTT
  TTTTTCCTTT TTTCTTTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385383284	MGP_WTSI_12_28020444	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231242720					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385383284	MGP_WTSI_12_28020444	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:27385578 () rs orientation: forward

Symbol	Name	Function Class
Rr464223	regulatory region 464223	1592 bp distal
Rr464224	regulatory region 464224	within coordinates
Rr464225	regulatory region 464225	1333 bp proximal
Sox11	SRY (sex determining region Y)-box 11	within coordinates
Tssr113042	transcription start site region 113042	634 bp upstream
Tssr113043	transcription start site region 113043	790 bp upstream
Tssr115960	transcription start site region 115960	800 bp upstream
Tssr115961	transcription start site region 115961	435 bp upstream
Tssr115962	transcription start site region 115962	within coordinates
Tssr115963	transcription start site region 115963	474 bp downstream
Tssr115964	transcription start site region 115964	825 bp downstream
Tssr115965	transcription start site region 115965	888 bp downstream
Tssr115966	transcription start site region 115966	977 bp downstream
Tssr115967	transcription start site region 115967	1249 bp downstream
Tssr115968	transcription start site region 115968	1263 bp downstream
Tssr115969	transcription start site region 115969	1340 bp downstream
Tssr115970	transcription start site region 115970	1365 bp downstream
Tssr115971	transcription start site region 115971	1408 bp downstream
Tssr115972	transcription start site region 115972	1542 bp downstream
Tssr115973	transcription start site region 115973	1908 bp downstream
Tssr115974	transcription start site region 115974	1956 bp downstream
Tssr115975	transcription start site region 115975	1996 bp downstream