rs231243788 SNP Detail

Summary

• ID
  rs231243788
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:66989268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTATCTA TCTATCTAAT
  TTATATGGGT ACGTTCTCTT CAGACACACC AGAAGAGGGC ATGAGATCCC ATTGCAGATG
  GTTGTGAGCC ACCATGTGGT TGCTGGGAAT TGAACTCAGG ACCTCTGGAA GAGCAGTCAG
  TGCTTTTAAC CGCTGAGCTA TCTCTCCAAC CCAGCAAGTT GTTGTTTTGA GTCTCTATAC
  W
  ATGTCTTAGC TCTGAGAAGC AGAGGTCTTT AGAGTTACAG AGAGCTAACG ACAGGCATCT
  AGTGGGCGCT TCACATTCCC AGGAGCCTGT GCAGAGGCAG GCGTTCAGAT GCAATGCGAG
  CTCATTTCAT TGCAGAAGAG ATAGCAGATC TCACTGAACA GATTGCCGAG AACGGTAAAA
  GCATCCATGA GCTAGAGAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323718359	CHEV_11_66911944	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231243788					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:66989268 () rs orientation: forward

Symbol	Name	Function Class
Mir6923	microRNA 6923	1362 bp upstream
Myh3	myosin, heavy polypeptide 3, skeletal muscle, embryonic	Intron
Rr449421	regulatory region 449421	1846 bp proximal
Rr449422	regulatory region 449422	1923 bp proximal
Tssr102156	transcription start site region 102156	494 bp downstream
Tssr102157	transcription start site region 102157	126 bp upstream