rs231243942 SNP Detail

Summary

• ID
  rs231243942
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141151804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAATAGAG GGGCTGAGGT
  ACCAACCTGG AGAGCAAGAC GAGGGCAGAG TCTAACACAG AGTGGCGGCT TCAATGGCAT
  TTCTGCAGGG CAGGGGACCA GAAGCCCCTT CCTGGCAAAT GAGAGGCTGG CCACAAGCAG
  GGCTTCTGGC CTAGGTAGAC TGCCTCAGGG AAGCCAGAGA GATAGCCATG ACTGTTACCT
  Y
  CCTTGTAACT CTCGAAACCT CAAACCCAGG GCTACCTGTC ACCCTGAGGC TCTAACAGCT
  ACATGTACCA GACAAAGACA CCTGTACCTA GATGGGGTTT ATTAAAATGA CATGAGGCTC
  CTATCTCCAG CTGCTGGTGC ATGAGGCCAG AGCCCAGGGC TCCTGGGTGG CTTCCCCTGC
  AGAGAGGGTC CTCTTTGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363520403	MGP_WTSI_4_140980408	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231243942					SNP	C	C	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363520403	MGP_WTSI_4_140980408	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141151804 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15228	CpG island 15228	1343 bp proximal
Gm70191	predicted gene, 70191	within coordinates
Hspb7	heat shock protein family, member 7 (cardiovascular)	mRNA-UTR
Rr603759	regulatory region 603759	332 bp proximal
Rr603760	regulatory region 603760	810 bp proximal
Rr603761	regulatory region 603761	1801 bp proximal
Tssr40062	transcription start site region 40062	1970 bp downstream
Tssr40063	transcription start site region 40063	484 bp downstream
Tssr40064	transcription start site region 40064	423 bp downstream
Tssr40065	transcription start site region 40065	396 bp downstream
Tssr40066	transcription start site region 40066	292 bp downstream
Tssr40067	transcription start site region 40067	238 bp downstream
Tssr40068	transcription start site region 40068	183 bp downstream
Tssr40069	transcription start site region 40069	56 bp downstream
Tssr40070	transcription start site region 40070	24 bp upstream
Tssr40071	transcription start site region 40071	48 bp upstream
Tssr40072	transcription start site region 40072	93 bp upstream
Tssr40073	transcription start site region 40073	116 bp upstream
Tssr40074	transcription start site region 40074	141 bp upstream
Tssr40075	transcription start site region 40075	154 bp upstream
Tssr40076	transcription start site region 40076	181 bp upstream
Tssr40077	transcription start site region 40077	200 bp upstream
Tssr40078	transcription start site region 40078	1916 bp upstream
Tssr44314	transcription start site region 44314	1854 bp upstream
Tssr44315	transcription start site region 44315	419 bp upstream
Tssr44316	transcription start site region 44316	321 bp upstream
Tssr44317	transcription start site region 44317	293 bp upstream
Tssr44318	transcription start site region 44318	65 bp downstream
Tssr44319	transcription start site region 44319	1075 bp downstream