rs231247949 SNP Detail

Summary

• ID
  rs231247949
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:109747154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCGTTAA TTTATTTACA
  TTTTCTTTTT TTTTTATTTG CATGAGGTGG CTAGTTAACT TTATACAGTA TAGATATTTT
  AATGCTCTTC TTGCTCTAAT GTAATGGGTT CATTAAAAAT GTGTACAATC TAGAGTAAAA
  ACAACCAAAG GCCTAGGAGA AAGCAAGAAA AGAGGCACTG AGAATGCTGA TTTTTTTTTT
  Y
  CTATAAACAT TATGTGGGAA AAAGGAAGGG ATGCTGATAG TTAACACACA AGTTGTTTCT
  GGTGTCTCAG GGGCAGTCAG CTGGCACTCA AATGTTCTCT TCCAGTGCTG GTTAACCGGC
  ACCTCCTTGG CTGGACTCCT CAACATCCTT GTGTTTAGGG AGAAAGAAGT CTGATTGGTG
  TCATGGATGA TTAACCGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355230941	MGP_WTSI_2_109756966	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231247949					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355230941	MGP_WTSI_2_109756966	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109747154 () rs orientation: forward

Symbol	Name	Function Class
Lgr4	leucine-rich repeat-containing G protein-coupled receptor 4	838 bp upstream
Rr397176	regulatory region 397176	549 bp upstream
Rr562509	regulatory region 562509	348 bp proximal
Rr562510	regulatory region 562510	849 bp proximal
Rr562511	regulatory region 562511	954 bp proximal
Rr562512	regulatory region 562512	993 bp proximal
Rr562513	regulatory region 562513	1381 bp proximal
Tssr19307	transcription start site region 19307	762 bp upstream
Tssr19308	transcription start site region 19308	787 bp upstream
Tssr19309	transcription start site region 19309	830 bp upstream
Tssr19310	transcription start site region 19310	870 bp upstream
Tssr19311	transcription start site region 19311	914 bp upstream