rs231260502 SNP Detail

Summary

• ID
  rs231260502
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:128580480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTTTGGAC GCGCCTGCCC
  AAGTCAATGA TTCCACATTC AGGAGAACCC AGAGAGGCAA GGCCAGAGTT CCACAATTCA
  CACACAACCC TAGACCTAGG TGCATTTCCT TCTCCACATG GCTTCACATT GCTTGACCCT
  GCCTGAGATA ATTGCCCACC TCTCCTCCGA GTTCCTCAGC TCCGCCTCGG ACTTGTCTAT
  R
  CACAGCCTTT TCTCTCAAAA TCCATATCCT TTCCTTAAGA CTAGGGTGGA GATTTAGGTG
  CATAAAACAA CGTTTGACTG TGTTCACCTT TTCTTCATAC CCAACCCTAG CACTTTACCC
  TCTGGCCTTG GCAGATGGCA CAGAAGTCGT TGGGCAAAGG TAGAGTCTGA AGGCAGAGCC
  TTTCAGTTCC TCCTACCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382210055	MGP_WTSI_10_128181667	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231260502					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382210055	MGP_WTSI_10_128181667	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128580480 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2418	CpG island 2418			388 bp distal
Dgka	diacylglycerol kinase, alpha			Intron
				mRNA-UTR
Gm31504	predicted gene, 31504			336 bp upstream
Gm66065	predicted gene, 66065			1358 bp downstream
Rr385480	regulatory region 385480			1056 bp downstream
Rr402364	regulatory region 402364			38 bp upstream
Rr441312	regulatory region 441312			547 bp distal
Rr441313	regulatory region 441313			within coordinates
Rr441314	regulatory region 441314			196 bp proximal
Rr441315	regulatory region 441315			1480 bp proximal
Rr441316	regulatory region 441316			1728 bp proximal
Tssr96440	transcription start site region 96440			182 bp upstream
Tssr96441	transcription start site region 96441			326 bp upstream
Tssr96442	transcription start site region 96442			582 bp upstream
Tssr96443	transcription start site region 96443			1846 bp upstream
Tssr99940	transcription start site region 99940			1892 bp upstream
Tssr99941	transcription start site region 99941			766 bp upstream
Tssr99942	transcription start site region 99942			701 bp upstream
Tssr99943	transcription start site region 99943			639 bp upstream
Tssr99944	transcription start site region 99944			616 bp upstream
Tssr99945	transcription start site region 99945			526 bp upstream
Tssr99946	transcription start site region 99946			502 bp upstream
Tssr99947	transcription start site region 99947			359 bp upstream
Tssr99948	transcription start site region 99948			329 bp upstream
Tssr99949	transcription start site region 99949			235 bp downstream
Tssr99950	transcription start site region 99950			435 bp downstream
Tssr99951	transcription start site region 99951			458 bp downstream
Tssr99952	transcription start site region 99952			471 bp downstream
Tssr99953	transcription start site region 99953			476 bp downstream
Tssr99954	transcription start site region 99954			834 bp downstream
Tssr99955	transcription start site region 99955			867 bp downstream
Tssr99956	transcription start site region 99956			1622 bp downstream
Tssr99957	transcription start site region 99957			1689 bp downstream