rs231263946 SNP Detail

Summary

• ID
  rs231263946
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:45825613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATCAACAA GAGGTATAAG
  ACATACAAAC TTTACATACA CTAATTATAT TGCTATTTTC TTTTATATTT CATGTATATA
  CAAAACAAAT TAAGCACATC TAGTCTAAAC ATTTTCCCGT ATAGTTGTTT TCAAGAATTA
  CTTATCTAAA ATTTGGAATC CAAGAACCTT ATGGTGTACA TTGTTTAGTT TTTGTTATTT
  Y
  CTTAAGCTTA TCAAAGACAC AAATTTATTC CTATATGTAT TTGTTCTTTC TCACAGAATA
  AAAGTAAGAG TCAAGAACTA TGTAAGCTTT ACAATGAGAT TATGCTGTAT GAATTTAATG
  TAGCATATTG GAAAAGTTCC ACGATTACGA TGTCCAAAGC ATACCAAATC CATACAACAT
  TCGTTACTAA AATCCACAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364768140	MGP_WTSI_5_46059510	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231263946					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364768140	MGP_WTSI_5_46059510	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:45825613 () rs orientation: forward

Symbol	Name	Function Class
1600023N17Rik	RIKEN cDNA 1600023N17 gene	431 bp downstream
Cpgi15841	CpG island 15841	974 bp proximal
Ncapg	non-SMC condensin I complex, subunit G	1648 bp upstream
Rr367838	regulatory region 367838	1311 bp upstream
Rr611093	regulatory region 611093	75 bp proximal
Rr611094	regulatory region 611094	219 bp proximal
Rr611095	regulatory region 611095	624 bp proximal
Rr611096	regulatory region 611096	1158 bp proximal
Rr611097	regulatory region 611097	1399 bp proximal
Tssr46141	transcription start site region 46141	1613 bp upstream
Tssr46142	transcription start site region 46142	1636 bp upstream
Tssr46143	transcription start site region 46143	1733 bp upstream
Tssr46144	transcription start site region 46144	1962 bp upstream