rs231271349 SNP Detail

Summary

• ID
  rs231271349
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:76169342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGATGCTGG GGGAACTGGG
  CTGAGGCCTC GGGTGCAAGG AGCCTCGCCC TCCCTCGGCA AGCGGGGAGC TCGTGCCCAG
  CAGGCCGGGC CTGGGGCTCA GTGCTGCCCC TTCTCCGAGT CACTTTTCCC GGCCGGGGAT
  CGGCGAGCAC CGCGCAAGGG AGACGGCAGC GATAGGCGGG GAGCAGCGCG GGCGCCACCG
  M
  GAGCACCGCT GGGCGGCAGG ACCGAGCGGC GCGGCAGCCA GCGCCCGGGG CTCGGGGCCA
  ACGGGGGCAG CTGGGCGGGC GAGCTCGACC GGGGCCCCGC GACCCGGCCA CCCGCGTGGG
  TCCCGGCGCA GAACACCCAG GGCGGCTGCG CCCCTCGCGC CAAGGCTGGC ACGGACGAGC
  CCGCGGCTGG GAACTCCACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss396907170	MGP_WTSI_16_76372699	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs231271349					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss396907170	MGP_WTSI_16_76372699	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:76169342 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8372	CpG island 8372	within coordinates
Nrip1	nuclear receptor interacting protein 1	within coordinates
Rr325475	regulatory region 325475	within coordinates
Tssr139017	transcription start site region 139017	643 bp upstream
Tssr139018	transcription start site region 139018	739 bp upstream
Tssr141820	transcription start site region 141820	560 bp downstream
Tssr141821	transcription start site region 141821	1385 bp downstream
Tssr141822	transcription start site region 141822	1400 bp downstream
Tssr141823	transcription start site region 141823	1418 bp downstream