rs231274611 SNP Detail

Summary

• ID
  rs231274611
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:86231745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACCGCCTCG ACCCTTCTCC TTCCCCGGCT
  TTGCTCTTAC TAATGGAGTG GATTGGTATG TGCGAGCCAG GGCCCTGAGG CTGGTTCTTA
  CCCGGACTCC GGAGCTACGA CGTGGAGCTT CTTTAGAACC CTGAGGACTG GAGTACTGGG
  Y
  TCAGAATTCT CTTACTTCCA TTCCCAGCAG CGCGCCTCCA GTCATTTCTG TCTTTCTCCA
  TCCAACCTGG TAACCAGGAA GTCATGGGGC TCTTGAGGAA AGCTCGATGA ATGTGGGTAG
  GAGGACTTAA CATTCACTCA CCCTGCGCCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319828017	CHEV_1_88200598	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231274611					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86231745 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
B3gnt7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7			Intron
				mRNA-UTR
Cpgi501	CpG island 501			within coordinates
Gm28626	predicted gene 28626			within coordinates
Rr366828	regulatory region 366828			1853 bp upstream
Rr414517	regulatory region 414517			779 bp distal
Rr414518	regulatory region 414518			within coordinates
Rr414519	regulatory region 414519			125 bp proximal
Tssr7735	transcription start site region 7735			784 bp downstream
Tssr7736	transcription start site region 7736			577 bp downstream
Tssr7737	transcription start site region 7737			541 bp downstream
Tssr7738	transcription start site region 7738			520 bp downstream