rs231283366 SNP Detail

Summary

• ID
  rs231283366
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:177575723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTCTCAT CTTTGATTTC
  CCTAACTTCT GTAGCCAAGA TTCTCTGTAA ATTCATTTCC TGTCACTTTT CTTTTTTTTT
  CATCTCCCTT TCATCCTCTT CCTCTTTTTT TTTTTTTTTT TTTGCTTCTT CTCCCCCTGT
  CTCCCTGTTA TGGTAGACTT CCTCAGCAAC CTGCACTAAA CCCCTCAGTG ACTTACCCTG
  W
  CATCCCTCTA GCCTCTGAAG CATTTTCCTG ATATCTCTAC TAGCCTGGTC TATAAATGCC
  ATAGTCACAG TAGCTTTGTG CTCCTTGCTG CTGGGATCAT AGGGTGTATA CTGACGGAAT
  GCCTCCATGA GTCATTCTAG AAAGGCAGCA GGTGACTCAT CTGATCCTTG TCTAACTTCA
  CGTACCTTGG TCAAATTTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320159128	CHEV_1_179678288	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231283366					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177575723 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr424057	regulatory region 424057			53 bp proximal
Spmip3	sperm microtubule inner protein 3			Intron
				Noncoding-Transcript-Variant