rs231286561 SNP Detail

Summary

• ID
  rs231286561
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:131453644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCCTAACA ACGCCCGCTC
  CGCCCGAAGA CCCGGCGTGG CGATCAATGT AGGGAGGAAA AATGTTCCCT CCAGGTTTTA
  AGGCAGAAAG AGAACACTTT GGAGCAGCCG GCAGCGCGTG CTCCGGGCGG AGACTGCGGC
  GGGAAAGCTG AGCTGCGGGT GGGGACTGCG GCACCTCGGC GCTTTCCCAA CCCTGCTAGC
  Y
  CAAGAGGGGT CCTCCCGCCT AGCCCGCGAC GCGGCCCCTG ACCTCCGGCT GGGGCACCTC
  CCAGACATCT ACAGGATCCA TACCAGAGGG GACAACCAGA TGGGCACAAC TTTTCTTCCC
  CTGCCACCCC TCCTCCCAGT TGTTTTGTTT TTGGTAACTA GCTTCTCCTG GCAGCAAAAC
  CGGGGAGGGG GGTGAGGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351452095	MGP_WTSI_1_133422483	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231286561					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351452095	MGP_WTSI_1_133422483	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131453644 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi711	CpG island 711			within coordinates
Fam72a	family with sequence similarity 72, member A			1997 bp upstream
Gm70877	predicted gene, 70877			718 bp upstream
Rr396286	regulatory region 396286			1376 bp upstream
Rr396287	regulatory region 396287			1687 bp upstream
Rr418127	regulatory region 418127			1750 bp distal
Rr418128	regulatory region 418128			773 bp distal
Rr418129	regulatory region 418129			228 bp proximal
Rr418130	regulatory region 418130			322 bp proximal
Rr418131	regulatory region 418131			729 bp proximal
Rr418132	regulatory region 418132			1431 bp proximal
Srgap2	SLIT-ROBO Rho GTPase activating protein 2			Intron
				Noncoding-Transcript-Variant
Tssr8627	transcription start site region 8627			627 bp downstream
Tssr8628	transcription start site region 8628			453 bp downstream
Tssr8629	transcription start site region 8629			1952 bp upstream
Tssr8630	transcription start site region 8630			1995 bp upstream
Tssr13589	transcription start site region 13589			744 bp upstream
Tssr13590	transcription start site region 13590			674 bp upstream
Tssr13591	transcription start site region 13591			647 bp upstream
Tssr13592	transcription start site region 13592			555 bp upstream
Tssr13593	transcription start site region 13593			478 bp upstream
Tssr13594	transcription start site region 13594			368 bp upstream
Tssr13595	transcription start site region 13595			321 bp upstream
Tssr13596	transcription start site region 13596			288 bp upstream
Tssr13597	transcription start site region 13597			59 bp upstream
Tssr13598	transcription start site region 13598			569 bp downstream
Tssr13599	transcription start site region 13599			650 bp downstream
Tssr13600	transcription start site region 13600			819 bp downstream
Tssr13601	transcription start site region 13601			1360 bp downstream
Tssr13602	transcription start site region 13602			1396 bp downstream
Tssr13603	transcription start site region 13603			1617 bp downstream