rs231291399 SNP Detail

Summary

• ID
  rs231291399
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:27031147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTC ATGGACAGTT TCAACCACCT
  Y
  CTACTGGCCA GAGGTGTCAA TTCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320220671	CHEV_2_26996655	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231291399					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27031147 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11367	CpG island 11367	769 bp proximal
Fam163b	family with sequence similarity 163, member B	Intron
Rr553477	regulatory region 553477	920 bp proximal
Rr553478	regulatory region 553478	1346 bp proximal
Tssr23189	transcription start site region 23189	1271 bp downstream
Tssr23190	transcription start site region 23190	1294 bp downstream
Tssr23191	transcription start site region 23191	1367 bp downstream
Tssr23192	transcription start site region 23192	1395 bp downstream