rs231294270 SNP Detail

Summary

• ID
  rs231294270
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5845660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAACTTC CTCATAGACA
  ATCCAGAATG TTTTCTCAGG GAGGAGAGCC TGAACAGCAG GGAAAGGCCT TGTGTTCCTG
  AGGTGCAAGA GTGGCCACCT AGGACCCAAG CCCAACTTTA GAGCCATCTG CATGAAAGAG
  CCATGCAGCC CAAGGAAACA GGGAAGGCCT CACTAATCGG AGAAGCTGAG GTAGATCAGA
  Y
  ATTTGGTCTC TTTAGGCTTA AAATAAGCCT GTGTTTTATG CACAAAGAAG CACACAATGA
  GAGATATTTA GTTTTTATTT CATAAAATCA AAGTATTCAA TAAATAGTAG GAGGTGTGTC
  GACTCAGAGG TAATAAGACG AATTGGGCAT AACCTGAAAG ACAATGCAGT TAATTATCAA
  GAGTTCAACA CTGAGGCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401662548	MGP_WTSI_19_5795632	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231294270					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401662548	MGP_WTSI_19_5795632	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5845660 () rs orientation: forward

Symbol	Name	Function Class
Malat1	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	58 bp downstream
Mascrna	Malat1-associated small cytoplasmic RNA	292 bp downstream
Tssr5415	transcription start site region 5415	1202 bp downstream
Tssr5416	transcription start site region 5416	1678 bp downstream
Tssr157645	transcription start site region 157645	721 bp downstream
Tssr157646	transcription start site region 157646	751 bp downstream
Tssr157647	transcription start site region 157647	913 bp downstream
Tssr157648	transcription start site region 157648	1079 bp downstream
Tssr157649	transcription start site region 157649	1179 bp downstream
Tssr157650	transcription start site region 157650	1238 bp downstream
Tssr157651	transcription start site region 157651	1292 bp downstream
Tssr157652	transcription start site region 157652	1429 bp downstream
Tssr157653	transcription start site region 157653	1546 bp downstream
Tssr157654	transcription start site region 157654	1589 bp downstream
Tssr157655	transcription start site region 157655	1626 bp downstream
Tssr157656	transcription start site region 157656	1656 bp downstream
Tssr157657	transcription start site region 157657	1778 bp downstream
Tssr157658	transcription start site region 157658	1830 bp downstream
Tssr157659	transcription start site region 157659	1933 bp downstream