rs231295063 SNP Detail

Summary

• ID
  rs231295063
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135964967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCCTCCAG GTTCTCCAGG
  CCAGCTGGGG CACAGGGGGA GGGGCTGCCC TTTGCCCAGG GGCTCTTCCC TATATAATCC
  AGACTTTTTG TTTACCCACC CCTTGTTTTG CTCCTTTTGT ACCTTTGGCT TCCTGGCTGG
  TTCCCCTTTC TTCATGGTTC AGGGTCATGA CCACTCTGGA CTCTTCCAGA TGTGTCTGCG
  K
  CTGGCTATGC CTCTTTTATA TCTTTTTTTT TTTTCCCCGA GACAGGGTTT CTCTGTGTAG
  CCATGGCTGT CCTGGAACTC ACTCTGTAGA CCAGGTTGGC CTCGAACCCA GAAATCTGCC
  TGCCTCTGCC TCCCAAGTGC TGGGATTAAA GGCATGCGCT GCCACCTTGC CCCTTTTTTA
  CCTGTAATAA ACTCTCTCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366846094	MGP_WTSI_5_136411983	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231295063					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366846094	MGP_WTSI_5_136411983	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135964967 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16773	CpG island 16773	1033 bp distal
Gm40346	predicted gene, 40346	1797 bp upstream
Gm57297	predicted gene, 57297	249 bp downstream
Rr378682	regulatory region 378682	within coordinates
Rr622480	regulatory region 622480	1570 bp distal
Rr622481	regulatory region 622481	1422 bp distal
Rr622482	regulatory region 622482	within coordinates
Tssr49205	transcription start site region 49205	993 bp downstream
Tssr53780	transcription start site region 53780	1545 bp upstream
Tssr53781	transcription start site region 53781	1500 bp upstream
Tssr53782	transcription start site region 53782	1480 bp upstream
Ywhag	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	1497 bp upstream