rs231315684 SNP Detail

Summary

• ID
  rs231315684
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:81908126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGTGAACTG CCACGTGGGT
  GCTGAGAATC AAATCCAGGG TCTCTGGAAG AGCAGCCAGT GCTCTTAACT ATTGAGCCCA
  CCCGTGCTTC TTTTTTTTTC TGTTTTGTTT TGCTTTTTTT TCCATTTTTG TTTTCAAGAT
  AGGGTTTCTC TCTGTAGTCT TTGCTGTCCT GGAGTTTGAC CTGTAGGCTC ACTGGCCACA
  R
  ATTCACAGAG ATCCATTTCC TCAGCCTCTG AGTGCTGGGA TTGAAGGTCT GTGCCATCAC
  TGTCCAGCCC TTCTTATTCT TTTTAGTTGC TCCTAACTTA CTTTCTTTAT AGCTCAAGCA
  TTGCTTTTGC CACCAAGAGA CAAAGGAAAG ATGAAGCAGA GCCAAGGGGG AGACACTAGT
  GTGGCCTGTC GCCTTCCATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394731775	MGP_WTSI_15_81854355	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231315684					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394731775	MGP_WTSI_15_81854355	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:81908126 () rs orientation: forward

Symbol	Name	Function Class
Rr304582	regulatory region 304582	475 bp proximal
Rr314730	regulatory region 314730	926 bp distal
Tssr132329	transcription start site region 132329	1199 bp downstream
Tssr132330	transcription start site region 132330	1168 bp downstream
Tssr132331	transcription start site region 132331	1124 bp downstream
Tssr132332	transcription start site region 132332	1085 bp downstream
Tssr132333	transcription start site region 132333	1053 bp downstream
Tssr132334	transcription start site region 132334	991 bp downstream
Tssr132335	transcription start site region 132335	960 bp downstream
Xrcc6	X-ray repair complementing defective repair in Chinese hamster cells 6	within coordinates