rs231317441 SNP Detail

Summary

• ID
  rs231317441
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:139336540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCCATTGC AAAGAAGGTT
  CAAGGTGAGA ACTGATACCA GACGTCATCC TCTGACCTCT ACACACGGGC TGTGGTATGT
  GTGTGTTTGT ACTCACACAC ATGAACCTGC ACATATGGGG ACACACACAC ACACACACAC
  ACACACACAC ACACACACAC ACACACACAG ACCTTTTCAA CTGTTCATGG TGCATACTAG
  Y
  AATCTAAGCC CTAGGGAAGG AGAGGCTGGA GGAGCAGGAG TTCAAAGCCA GCATGAGCTA
  CACAAGACCC TGTATCAAGA CCACCACCAC CATAACAACA AACAGCAAAA TTCCTTCCCC
  AAAATAACTC CCAAGGTAGC TGAGTGGTGT TGCCTGCGAT CCCAGCCCTG GGAGGCAGAA
  GCAGGAGGAT TTGGGCCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321704283	CHEV_5_139826739	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231317441					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:139336540 () rs orientation: forward

Symbol	Name	Function Class
Cyp2w1	cytochrome P450, family 2, subfamily w, polypeptide 1	1832 bp upstream
Rr623253	regulatory region 623253	659 bp distal
Rr623254	regulatory region 623254	369 bp proximal
Rr623255	regulatory region 623255	623 bp proximal
Rr623256	regulatory region 623256	1342 bp proximal
Tssr49499	transcription start site region 49499	1822 bp upstream