rs231333310 SNP Detail

Summary

• ID
  rs231333310
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:111828690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gaacttgta aagtccactt ccagcagaaa
  gacagggcat gaagtgaggg atggggttgt cttcccacag tcaaaaactc tgacccataa
  tttttcctgt ctgaaagaat tacagggaca gaaatggaga gagcctgagg aaaaggtggt
  T
  cagtgacatg cccaaagtgg gatccagctt aagtggaggc cccaaggcct gacaatataa
  ccgaggctat ggtgtggtca caaaaagggg cctattatca ctaccttcca aaagaaccaa
  caagcagctg aaagagtcag tggagatatt                                 
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321263720	CHEV_4_111644098	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231333310					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111828690 () rs orientation: forward

Symbol	Name	Function Class
Skint7	selection and upkeep of intraepithelial T cells 7	1430 bp upstream
Tssr38394	transcription start site region 38394	1340 bp upstream
Tssr38395	transcription start site region 38395	1429 bp upstream
Tssr38396	transcription start site region 38396	1539 bp upstream