rs231335953 SNP Detail

Summary

• ID
  rs231335953
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56429464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAGCTTTC CTACTGAACA
  AGGAGCAATG CCTGGCTCTG ATTGTAAAGT CTTCCACAAG GAACCAAGCA GGTCTGGCTT
  AGGTTCTCTG GGACTCAGTT TCCCTGCCTG CACAGCTGAA CTTGATTGTC AAGAGATTCT
  TTGGTGATTC CATCTACCTG AAGTGCAGTA GGTGCATATG TCTGTTGTGA AGACACACCT
  M
  ACATGTCATC TCATTATAGC ACAGGGTTGG AGTATGGAGG CTGGAGAATC ACTTCGACTT
  TGACATCAGA CTGGGCTACA TACTGAGACT GTCCAACAAC AAAACCCACA ACAGCAAAAT
  GCATTTCAAG GCTATGAATT TGCCTTTGAG GACACCTTTG GCTGTATCTA TGTGTGATGT
  GCACACACAC TTGCACAGGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398551838	MGP_WTSI_17_56261887	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231335953					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398551838	MGP_WTSI_17_56261887	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56429464 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9340	CpG island 9340	1537 bp distal
Cpgi9341	CpG island 9341	967 bp proximal
Gm56918	predicted gene, 56918	1387 bp downstream
Lrg1	leucine-rich alpha-2-glycoprotein 1	518 bp upstream
Rr340022	regulatory region 340022	463 bp distal
Rr340023	regulatory region 340023	1336 bp proximal
Sema6b	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	621 bp downstream
Tssr5175	transcription start site region 5175	522 bp upstream
Tssr148753	transcription start site region 148753	1844 bp upstream
Tssr148754	transcription start site region 148754	1783 bp upstream
Tssr148755	transcription start site region 148755	1646 bp upstream
Tssr148756	transcription start site region 148756	1616 bp upstream
Tssr148757	transcription start site region 148757	1436 bp upstream
Tssr148758	transcription start site region 148758	1401 bp upstream
Tssr148759	transcription start site region 148759	544 bp upstream
Tssr148760	transcription start site region 148760	506 bp upstream
Tssr148761	transcription start site region 148761	478 bp upstream
Tssr148762	transcription start site region 148762	463 bp upstream