rs231353343 SNP Detail

Summary

• ID
  rs231353343
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:138553958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTACTGAG GCATATAAAG
  TTTGCAAGTC CAATGGGCCT CTCTTTCCAG TGATGGCCGA CTAGGCCATC TTTTGATATA
  TATGCAGCTA GAGTCAAGAG CTCCGGAGTA CTGGTTAGTT CATAATGTTG TTCCACCTAT
  AGGGTTGCAG ATCCCTTTAG CTCCTTGGCT ACTTTCTCTA GCTCCTCCAT TGGGAGCCCT
  R
  TGATCCATCC ATTAGCTGAC TGTGAGCATC CACTTCTGTG TTTGCTAGGC CCCGGCATAG
  TCTCACAAGA AACAGCTACA TCTGGGTCCT TTCAATAAAA TCTTGCTAGT GTATGCAATG
  GTGTCAGTGT TTGGATGCTG ATTATGGGGT GGATCCCTGG ATATGGCAGT CTCTACATGG
  TCCATCCTTT CATCTCAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	FVB/NJ	I/LnJ	LG/J	MOLF/EiJ	NON/ShiLtJ	PL/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss366898838	MGP_WTSI_5_138996924	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	FVB/NJ	I/LnJ	LG/J	MOLF/EiJ	NON/ShiLtJ	PL/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs231353343					SNP	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366898838	MGP_WTSI_5_138996924	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:138553958 () rs orientation: forward

Symbol	Name	Function Class
D5Dcr15	DNA Segment, Chr 5, Derry C. Roopenian 15	1386 bp proximal
D5Mit31	DNA segment, Chr 5, Massachusetts Institute of Technology 31	1278 bp proximal