rs231353978 SNP Detail

Summary

• ID
  rs231353978
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:120879419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTATC TTATTCTGAG TCACTCATTT
  Y
  ACATTCAGTT CCCCAAAGGG GTATC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323870959	CHEV_11_120849907	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231353978					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:120879419 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4335	CpG island 4335	1548 bp proximal
Csnk1d	casein kinase 1, delta	within coordinates
Rr461861	regulatory region 461861	778 bp distal
Rr461862	regulatory region 461862	within coordinates
Rr461863	regulatory region 461863	438 bp proximal
Rr461864	regulatory region 461864	897 bp proximal
Tssr106388	transcription start site region 106388	1965 bp upstream