rs231373222 SNP Detail

Summary

• ID
  rs231373222
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9302749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGACCTAA TGCCTAGGGT
  GCAACACGAA GGTCTGTCTG GACCTTTGTC CCAGGGCAAC AATTCTCCTG GTACCATGTG
  CACATCTAGG AAGGCCTTAT TTACCAGAAC CAGCCTTGAG TGCTCTAAGG ATGCTAAGCG
  AACAAGAGCA TAGCAGGAAC ATAAGGAGAA TCTGAGCTCT CCCTTCGTCT AGTCCCTTCA
  R
  AATCTTCATA CAATAGCAAA ATTTGTGATC AGAACTAAAA CTATGCAATG CAATATGAAG
  TCAAAACAAG ATGAGCGCAT GCGTCCTTTA GTTACATGTG ATACATATCA AGTAGCAATG
  GAGGCCGAAT CCTAACCACC ATGAGACCCT TTGCCTCTGA CACTTCCCTT GTGAGTGTGG
  TGCTTTCCTT TCTCTCCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403025250	MGP_WTSI_X_9013636	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231373222					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403025250	MGP_WTSI_X_9013636	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9302749 () rs orientation: forward

Symbol	Name	Function Class
Cybb	cytochrome b-245, beta polypeptide	within coordinates
Tssr160517	transcription start site region 160517	1011 bp downstream
Tssr160518	transcription start site region 160518	509 bp downstream
Tssr160519	transcription start site region 160519	120 bp upstream
Tssr160520	transcription start site region 160520	144 bp upstream
Tssr160521	transcription start site region 160521	231 bp upstream
Tssr160522	transcription start site region 160522	362 bp upstream
Tssr162873	transcription start site region 162873	862 bp upstream
Tssr162874	transcription start site region 162874	606 bp upstream
Tssr162875	transcription start site region 162875	583 bp upstream
Tssr162876	transcription start site region 162876	427 bp upstream
Tssr162877	transcription start site region 162877	408 bp upstream
Tssr162878	transcription start site region 162878	356 bp upstream
Tssr162879	transcription start site region 162879	250 bp upstream
Tssr162880	transcription start site region 162880	164 bp upstream
Tssr162881	transcription start site region 162881	146 bp upstream
Tssr162882	transcription start site region 162882	151 bp downstream
Tssr162883	transcription start site region 162883	531 bp downstream
Tssr162884	transcription start site region 162884	573 bp downstream
Tssr162885	transcription start site region 162885	617 bp downstream
Tssr162886	transcription start site region 162886	664 bp downstream
Tssr162887	transcription start site region 162887	691 bp downstream
Tssr162888	transcription start site region 162888	744 bp downstream
Tssr162889	transcription start site region 162889	774 bp downstream
Tssr162890	transcription start site region 162890	834 bp downstream
Tssr162891	transcription start site region 162891	868 bp downstream
Tssr162892	transcription start site region 162892	921 bp downstream
Tssr162893	transcription start site region 162893	1025 bp downstream
Tssr162894	transcription start site region 162894	1055 bp downstream
Tssr162895	transcription start site region 162895	1115 bp downstream
Tssr162896	transcription start site region 162896	1141 bp downstream
Tssr162897	transcription start site region 162897	1168 bp downstream
Tssr162898	transcription start site region 162898	1192 bp downstream
Tssr162899	transcription start site region 162899	1338 bp downstream
Tssr162900	transcription start site region 162900	1348 bp downstream
Tssr162901	transcription start site region 162901	1379 bp downstream
Tssr162902	transcription start site region 162902	1461 bp downstream
Tssr162903	transcription start site region 162903	1522 bp downstream
Tssr162904	transcription start site region 162904	1623 bp downstream
Tssr162905	transcription start site region 162905	1707 bp downstream
Tssr162906	transcription start site region 162906	1711 bp downstream
Tssr162907	transcription start site region 162907	1784 bp downstream
Tssr162908	transcription start site region 162908	1808 bp downstream