rs231375957 SNP Detail

Summary

• ID
  rs231375957
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3730027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCCCAAT AACCCAGGAC
  CACCCACAGG GAGCTGAGCC TTCAACCATG AATCAAGAAA ATGTCCTGCC AGGCAGTGGT
  GGCATATGCC TTTAATCCCA GCACTTGGGA GGCAGAGGCA GGCGGAATTC TGAGTTCAAG
  GCCAGCCTGG TCTACAGAGT GAGTTCCCTA ACAGCCAGGG CTACACAGAA AAACCCTGCC
  W
  TGAAAAACCA AAAAAAAAAA AAAAAAAAAA AAAAGAAAGA AAGAAAGAAA GAAAGAAAGA
  AAAAGAAAAA AGAAACTGGC CCACAGCAGG CTGGCCCACA GCCTGATCTC ATGTTCTTAG
  TTGAGGTTCT CTCCTCTTAG ATGATGTTAG CTTGTGTGAC ATAAATCTCT CCAGCATAAA
  AGCTAATTGA AGAATGGAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320205108	CHEV_2_3646262	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231375957					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3730027 () rs orientation: forward

Symbol	Name	Function Class
Fam107b	family with sequence similarity 107, member B	within coordinates
Rr367092	regulatory region 367092	1185 bp downstream
Rr396754	regulatory region 396754	1867 bp downstream
Rr550942	regulatory region 550942	503 bp distal
Rr550943	regulatory region 550943	1802 bp proximal
Tssr15911	transcription start site region 15911	1805 bp downstream
Tssr15912	transcription start site region 15912	1967 bp upstream